Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12
biomaterial_provider
Barbara Wold lab
lab
Caltech-m
lab description
Wold - Califonia Institute of Technology
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
C2C12
cell organism
mouse
cell description
Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
Control_50bp
control description
This data represents a control being compared to experiments using read length of 50 bp
treatment
None
treatment description
No special treatment or protocol applies
age
immortalized
age description
Immortal cells
control
Control_50bp
control description
This data represents a control being compared to experiments using read length of 50 bp
controlid
11612
labexpid
11612
labversion
Myoblast
replicate
1
strain
C3H
strain description
Strain C3H, Very related to C57BL/6

Sequenced DNA Library

library_name
GSM915172: Caltech_ChipSeq_C2C12_Input_Control_50bp
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
54802915
Reads aligned (%)
97.8
Duplicates removed (%)
14.2
Number of peaks
664 (qval < 1E-05)

mm9

Number of total reads
54802915
Reads aligned (%)
97.6
Duplicates removed (%)
14.1
Number of peaks
737 (qval < 1E-05)

Base call quality data from DBCLS SRA