Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Myog

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12
biomaterial_provider
Barbara Wold lab
lab
Caltech-m
lab description
Wold - Califonia Institute of Technology
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
C2C12
cell organism
mouse
cell description
Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex
F
antibody
Myogenin_(sc-12732)
antibody description
mouse monoclonal antibody; epitope mapping within amino acids 138-158 of myogenin of rat origin. Antibody Target: Myogenin
antibody targetdescription
Myogenin is a muscle-specific transcription factor that can induce myogenesis in a variety of cell types in tissue culture. It is a member of a large family of proteins related by sequence homology, the helix-loop-helix (HLH) proteins. It is essential for the development of functional skeletal muscle. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-12732
control
Control_50bp
control description
This data represents a control being compared to experiments using read length of 50 bp
treatment
EqS_2.0pct_7d
treatment description
7 d with 2.0% Equine Serum and Insulin (Wold)
age
immortalized
age description
Immortal cells
control
Control_50bp
control description
This data represents a control being compared to experiments using read length of 50 bp
controlid
11637
labexpid
11927
labversion
Myocyte
labversion description
Myocyte
replicate
1
strain
C3H
strain description
Strain C3H, Very related to C57BL/6

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
21949692
Reads aligned (%)
95.1
Duplicates removed (%)
16.5
Number of peaks
10796 (qval < 1E-05)

mm9

Number of total reads
21949692
Reads aligned (%)
94.9
Duplicates removed (%)
16.5
Number of peaks
10821 (qval < 1E-05)

Base call quality data from DBCLS SRA