Curated Sample Data


Genome
mm9
Antigen Class
Input control
Antigen
Input control
Cell type Class
Muscle
Cell type
C2C12

Cell type information


Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by Original Data Submitter


source_name
C2C12
biomaterial_provider
Barbara Wold lab
lab
Caltech-m
lab description
Wold - Califonia Institute of Technology
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
C2C12
cell organism
mouse
cell description
Myoblast cell line derived from thigh muscle of C3H mice after crush injury
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
control
Control_36bp
control description
This data represents a control being compared to experiments using read length of 36 bp
treatment
None
treatment description
No special treatment or protocol applies
age
immortalized
age description
Immortal cells
control
Control_36bp
control description
This data represents a control being compared to experiments using read length of 36 bp
controlid
11612
labexpid
11612
replicate
1
strain
C3H
strain description
Strain C3H, Very related to C57BL/6

Metadata from Sequence Read Archive

Library Description


library_name
GSM915160: Caltech_ChipSeq_C2C12_Input_Control_36bp
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
36219515
Reads aligned (%)
83.4
Duplicates removed (%)
13.8
Number of peaks
675 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA