Curated Sample Data
- Genome
- mm9
- Antigen Class
- Input control
- Antigen
- Input control
- Cell type Class
- Muscle
- Cell type
- C2C12
Cell type information
- Primary Tissue
- Skeletal Muscle
- Tissue Diagnosis
- NOS
Attributes by Original Data Submitter
- source_name
- C2C12
- biomaterial_provider
- Barbara Wold lab
- lab
- Caltech-m
- lab description
- Wold - Califonia Institute of Technology
- datatype
- ChipSeq
- datatype description
- Chromatin IP Sequencing
- cell
- C2C12
- cell organism
- mouse
- cell description
- Myoblast cell line derived from thigh muscle of C3H mice after crush injury
- cell sex
- F
- antibody
- Input
- antibody description
- Control signal which may be subtracted from experimental raw signal before peaks are called.
- control
- Control_36bp
- control description
- This data represents a control being compared to experiments using read length of 36 bp
- treatment
- None
- treatment description
- No special treatment or protocol applies
- age
- immortalized
- age description
- Immortal cells
- control
- Control_36bp
- control description
- This data represents a control being compared to experiments using read length of 36 bp
- controlid
- 11612
- labexpid
- 11612
- replicate
- 1
- strain
- C3H
- strain description
- Strain C3H, Very related to C57BL/6
Metadata from Sequence Read Archive
Library Description
- library_name
- GSM915160: Caltech_ChipSeq_C2C12_Input_Control_36bp
- library_strategy
- ChIP-Seq
- library_source
- GENOMIC
- library_selection
- ChIP
Platform Information
- instrument_model
- Illumina Genome Analyzer II
- Number of total reads
- 36219515
- Reads aligned (%)
- 83.4
- Duplicates removed (%)
- 13.8
- Number of peaks
- 675 (qval < 1E-05)