SRX141253
GSM914084: T4 IgG ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Resting T cells, conconavalin A (conA) activation for 4hrs
tissue
spleen
cell type
Resting T cells
antibody
Santa Cruz SC-2025

Sequenced DNA Library

library_name
GSM914084: T4_IgG_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
12421246
Reads aligned (%)
71.8
Duplicates removed (%)
59.3
Number of peaks
406 (qval < 1E-05)

mm9

Number of total reads
12421246
Reads aligned (%)
71.7
Duplicates removed (%)
59.6
Number of peaks
435 (qval < 1E-05)

Base call quality data from DBCLS SRA