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Colocalization
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Nelfe
wikigenes
PDBj
CellType: MEL
ATCC
MeSH
RIKEN BRC
SRX140395
GSM912932: Stanford ChipSeq MEL NELFe IgG-rab
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Nelfe
Cell type
Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)
Attributes by original data submitter
Sample
source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
NELFe
antibody antibodydescription
NELFe (RDBP). Antibody Target: NELFe
antibody targetdescription
NELFe (RDBP) is a part of the negative elongation factor complex which binds to RNAPII to suppress elongation.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-32912
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
MEL/None/Input/IgG-rab
replicate
1
strain
Unknown
strain description
Unknown strain origin
Sequenced DNA Library
library_name
GSM912932: Stanford_ChipSeq_MEL_NELFe_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
56641548
Reads aligned (%)
90.1
Duplicates removed (%)
14.8
Number of peaks
22991 (qval < 1E-05)
mm9
Number of total reads
56641548
Reads aligned (%)
89.9
Duplicates removed (%)
14.8
Number of peaks
23059 (qval < 1E-05)
Base call quality data from
DBCLS SRA