Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ep300

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
p300
antibody antibodydescription
Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription
EP300(c-20)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-585
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
MEL/None/Input/IgG-rab
replicate
1
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM912921: Stanford_ChipSeq_MEL_p300_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
61265823
Reads aligned (%)
90.7
Duplicates removed (%)
17.8
Number of peaks
53606 (qval < 1E-05)

mm9

Number of total reads
61265823
Reads aligned (%)
90.5
Duplicates removed (%)
17.8
Number of peaks
53619 (qval < 1E-05)

Base call quality data from DBCLS SRA