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Colocalization
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: CH12
ATCC
MeSH
RIKEN BRC
SRX140381
GSM912918: Stanford ChipSeq CH12 Input IgG-mus
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)
Attributes by original data submitter
Sample
source_name
CH12
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-mus
control description
Input signal from Normal Mouse IgG ChIP-seq.
controlid
CH12/None/Input/IgG-mus
replicate
1
strain
B10.H-2aH-4bp/Wts
strain description
Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Sequenced DNA Library
library_name
GSM912918: Stanford_ChipSeq_CH12_Input_IgG-mus
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
36675373
Reads aligned (%)
81.2
Duplicates removed (%)
24.1
Number of peaks
654 (qval < 1E-05)
mm9
Number of total reads
36675373
Reads aligned (%)
81.0
Duplicates removed (%)
24.1
Number of peaks
773 (qval < 1E-05)
Base call quality data from
DBCLS SRA