SRX140377
GSM912914: Stanford ChipSeq MEL E2F4 IgG-rab

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
E2f4

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
E2F4
antibody antibodydescription
rabbit polyclonal. Antibody Target: E2F4
antibody targetdescription
mapping at the C-terminus of E2F4 of human origin
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-866
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
MEL/None/Input/IgG-rab
replicate
1
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM912914: Stanford_ChipSeq_MEL_E2F4_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
49712317
Reads aligned (%)
79.7
Duplicates removed (%)
15.7
Number of peaks
8027 (qval < 1E-05)

mm9

Number of total reads
49712317
Reads aligned (%)
79.5
Duplicates removed (%)
15.7
Number of peaks
7997 (qval < 1E-05)

Base call quality data from DBCLS SRA