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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
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For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Rad21
wikigenes
PDBj
CellType: CH12
ATCC
MeSH
RIKEN BRC
SRX140374
GSM912911: Stanford ChipSeq CH12 Rad21 IgG-rab
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Rad21
Cell type
Cell type Class
Blood
Cell type
CH12
Tissue
Blood
Lineage
cellLine
Description
B-cell lymphoma (GM12878 analog)
Attributes by original data submitter
Sample
source_name
CH12
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
CH12
cell organism
mouse
cell description
B-cell lymphoma (GM12878 analog)
cell sex
F
antibody
Rad21
antibody antibodydescription
Rabbit polyclonal. Antibody Target: RAD21
antibody targetdescription
Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14
antibody vendorname
Abcam
antibody vendorid
ab992
treatment
None
treatment description
No special treatment or protocol applies
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
age
immortalized
age description
Immortal cells
control
IgG-rab
control description
Input signal from Normal Rabbit IgG ChIP-seq.
controlid
CH12/None/Input/IgG-rab
replicate
1
strain
B10.H-2aH-4bp/Wts
strain description
Derived by inbreeding from selected F2 progeny of B10.A X B10.129
Sequenced DNA Library
library_name
GSM912911: Stanford_ChipSeq_CH12_Rad21_IgG-rab
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
67284879
Reads aligned (%)
90.0
Duplicates removed (%)
28.4
Number of peaks
75564 (qval < 1E-05)
mm9
Number of total reads
67284879
Reads aligned (%)
89.8
Duplicates removed (%)
28.5
Number of peaks
75585 (qval < 1E-05)
Base call quality data from
DBCLS SRA