Antigen

Antigen Class

TFs and others

Antigen

Gata1

Cell type

Cell type Class

Blood

Cell type

MEL

Tissue

Blood

Lineage

cellLine

Description

Leukemia (K562 analog)

Sample

source_name

MEL

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

MEL

cell organism

mouse

cell description

Leukemia (K562 analog)

cell sex

M

antibody

GATA-1

antibody antibodydescription

Anti-GATA-1 rabbit polyclonal antibody was generated by using a purified GST fusion to amino acids 1-89 of mouse GATA-1. Antibody Target: GATA1

antibody targetdescription

GATA-1 is a transcriptional activator which probably serves as a general switch factor for erythroid development. It binds to DNA sites with the consensus sequence [AT]GATA[AG} within regulatory regions of globin genes and of other genes expressed in erythroid cells.

antibody vendorname

Donated by Dr. E.H. Bresnick, UW Madison

antibody vendorid

GATA-1

treatment

None

treatment description

No special treatment or protocol applies

control

IgG-rat

control description

Input signal from Normal Rat IgG ChIP-seq

age

immortalized

age description

Immortal cells

control

IgG-rat

control description

Input signal from Normal Rat IgG ChIP-seq

controlid

MEL/None/Input/IgG-rat

replicate

1

strain

Unknown

strain description

Unknown strain origin

Sequenced DNA Library

library_name

GSM912907: Stanford_ChipSeq_MEL_GATA-1_IgG-rat

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

52363123

Reads aligned (%)

78.7

Duplicates removed (%)

13.8

Number of peaks

50105 (qval < 1E-05)

mm9

Number of total reads

52363123

Reads aligned (%)

78.6

Duplicates removed (%)

13.8

Number of peaks

50149 (qval < 1E-05)