Antigen

Antigen Class

TFs and others

Antigen

Myc

Cell type

Cell type Class

Blood

Cell type

CH12

Tissue

Blood

Lineage

cellLine

Description

B-cell lymphoma (GM12878 analog)

Sample

source_name

CH12

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

CH12

cell organism

mouse

cell description

B-cell lymphoma (GM12878 analog)

cell sex

F

antibody

c-Myc

antibody antibodydescription

rabbit polyclonal to amino acids 1-262 of c-Myc human origin. Antibody Target: c-Myc

antibody targetdescription

transcription factor; c-Myc-encoded proteins function in cell proliferation,differentiation and neoplastic disease

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-764

treatment

None

treatment description

No special treatment or protocol applies

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

age

immortalized

age description

Immortal cells

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

CH12/None/Input/IgG-rab

replicate

1

strain

B10.H-2aH-4bp/Wts

strain description

Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name

GSM912906: Stanford_ChipSeq_CH12_c-Myc_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

53228221

Reads aligned (%)

73.9

Duplicates removed (%)

16.6

Number of peaks

36834 (qval < 1E-05)

mm9

Number of total reads

53228221

Reads aligned (%)

73.7

Duplicates removed (%)

16.6

Number of peaks

36794 (qval < 1E-05)