Antigen

Antigen Class

TFs and others

Antigen

Jun

Cell type

Cell type Class

Blood

Cell type

CH12

Tissue

Blood

Lineage

cellLine

Description

B-cell lymphoma (GM12878 analog)

Sample

source_name

CH12

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

CH12

cell organism

mouse

cell description

B-cell lymphoma (GM12878 analog)

cell sex

F

antibody

c-Jun

antibody antibodydescription

Rabbit polyclonal to amino acids 1-79 mapping at the N-terminus of c-Jun p39 of human origin. Antibody Target: c-Jun

antibody targetdescription

Heterodimer of Fos and Jun constitute transcription factor AP1. Proto-oncogene c-Jun is a leucine-zipper.

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-1694

treatment

None

treatment description

No special treatment or protocol applies

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

age

immortalized

age description

Immortal cells

control

IgG-rab

control description

Input signal from Normal Rabbit IgG ChIP-seq.

controlid

CH12/None/Input/IgG-rab

replicate

1

strain

B10.H-2aH-4bp/Wts

strain description

Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name

GSM912901: Stanford_ChipSeq_CH12_c-Jun_IgG-rab

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

47089985

Reads aligned (%)

72.5

Duplicates removed (%)

22.3

Number of peaks

22039 (qval < 1E-05)

mm9

Number of total reads

47089985

Reads aligned (%)

72.3

Duplicates removed (%)

22.3

Number of peaks

22046 (qval < 1E-05)