Antigen

Antigen Class

RNA polymerase

Antigen

RNA polymerase II

Cell type

Cell type Class

Blood

Cell type

CH12

Tissue

Blood

Lineage

cellLine

Description

B-cell lymphoma (GM12878 analog)

Sample

source_name

CH12

biomaterial_provider

Weissman lab

lab

Stanford-m

lab description

Snyder - Stanford University

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell

CH12

cell organism

mouse

cell description

B-cell lymphoma (GM12878 analog)

cell sex

F

antibody

Pol2

antibody antibodydescription

mouse monoclonal, clone 8WG16. Antibody Target: POL2

antibody targetdescription

RNA Polymerase II

antibody vendorname

Covance

antibody vendorid

MMS-126R

treatment

None

treatment description

No special treatment or protocol applies

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

age

immortalized

age description

Immortal cells

control

IgG-mus

control description

Input signal from Normal Mouse IgG ChIP-seq.

controlid

CH12/None/Input/IgG-mus

replicate

1

strain

B10.H-2aH-4bp/Wts

strain description

Derived by inbreeding from selected F2 progeny of B10.A X B10.129

Sequenced DNA Library

library_name

GSM912891: Stanford_ChipSeq_CH12_Pol2_IgG-mus

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer II

mm10

Number of total reads

40468050

Reads aligned (%)

83.2

Duplicates removed (%)

19.0

Number of peaks

28104 (qval < 1E-05)

mm9

Number of total reads

40468050

Reads aligned (%)

83.0

Duplicates removed (%)

19.1

Number of peaks

28077 (qval < 1E-05)