Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Neural tube
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse embryonic day 11.5 (e11.5) neural tube, control
strain
129/C57BL/6
genotype/variation
SMARCA4/FLAG knock-in
Sex
pooled male and female
age
embryonic day 11.5 (e11.5)
tissue
tube
chip antibody
none

Sequenced DNA Library

library_name
GSM912552: mouse_e11.5_neural-tube_control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
56973759
Reads aligned (%)
74.6
Duplicates removed (%)
26.2
Number of peaks
1825 (qval < 1E-05)

mm9

Number of total reads
56973759
Reads aligned (%)
74.2
Duplicates removed (%)
26.0
Number of peaks
1888 (qval < 1E-05)

Base call quality data from DBCLS SRA