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BigWig
Peak-call (q < 1E-05)
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For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Embryonic limb
ATCC
MeSH
RIKEN BRC
SRX139881
GSM912550: mouse e11.5 limb control; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA
Attributes by original data submitter
Sample
source_name
Mouse embryonic day 11.5 (e11.5) limb, control
strain
129/C57BL/6
genotype/variation
SMARCA4/FLAG knock-in
Sex
pooled male and female
age
embryonic day 11.5 (e11.5)
tissue
limb
chip antibody
none
Sequenced DNA Library
library_name
GSM912550: mouse_e11.5_limb_control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
66096759
Reads aligned (%)
85.4
Duplicates removed (%)
41.1
Number of peaks
15022 (qval < 1E-05)
mm9
Number of total reads
66096759
Reads aligned (%)
84.7
Duplicates removed (%)
40.8
Number of peaks
13621 (qval < 1E-05)
Base call quality data from
DBCLS SRA