SRX139880
GSM912549: mouse e11.5 limb smarca4-flag; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Epitope tags

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

source_name
Mouse embryonic day 11.5 (e11.5) limb, FLAG-ChIP
strain
129/C57BL/6
genotype/variation
SMARCA4/FLAG knock-in
Sex
pooled male and female
age
embryonic day 11.5 (e11.5)
tissue
limb
chip antibody
anti-FLAG [Sigma- F1804 [ 1mg/ml ]-Monoclonal ANTI-FLAG M2 antibody produced in mouse. Lot #: 088K6018]

Sequenced DNA Library

library_name
GSM912549: mouse_e11.5_limb_smarca4-flag
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
62433133
Reads aligned (%)
62.1
Duplicates removed (%)
27.0
Number of peaks
32622 (qval < 1E-05)

mm9

Number of total reads
62433133
Reads aligned (%)
61.8
Duplicates removed (%)
26.9
Number of peaks
31829 (qval < 1E-05)

Base call quality data from DBCLS SRA