Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ELF3

Cell type

Cell type Class
Pancreas
Cell type
CFPAC-1
Primary Tissue
Pancreas
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
Pancreatic Ductal Adenocarcinoma (PDAC) cell line
cell type
CFPAC1 genome-edited clonal cell line
genotype/variation
KLF5-KO
antibody
Anti-ELF3 (Sigma # HPA003479)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
33662944
Reads aligned (%)
96.7
Duplicates removed (%)
8.2
Number of peaks
28124 (qval < 1E-05)

hg19

Number of total reads
33662944
Reads aligned (%)
95.7
Duplicates removed (%)
11.1
Number of peaks
28003 (qval < 1E-05)

Base call quality data from DBCLS SRA