SRX1371108
GSM1916975: input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Loucy
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Acute Lymphocytic

Attributes by original data submitter

Sample

source_name
LOUCY cell line_input
cell line
LOUCY
cell type
T-ALL

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was purified by phenol/chloroform extraction, assisted by phase lock gel tubes (5Prime). library preparation was performed using the standard Illumina protocol. Sequenced with an unstranded single end sequencing protocol.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
81856618
Reads aligned (%)
98.3
Duplicates removed (%)
3.7
Number of peaks
2035 (qval < 1E-05)

hg19

Number of total reads
81856618
Reads aligned (%)
97.4
Duplicates removed (%)
4.8
Number of peaks
1404 (qval < 1E-05)

Base call quality data from DBCLS SRA