Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
Retina
MeSH Description
The ten-layered nervous tissue membrane of the eye. It is continuous with the OPTIC NERVE and receives images of external objects and transmits visual impulses to the brain. Its outer surface is in contact with the CHOROID and the inner surface with the VITREOUS BODY. The outer-most layer is pigmented, whereas the inner nine layers are transparent.

Attributes by original data submitter

Sample

source_name
retina_input_P0
tissue
retina
genotype
wildtype
antibody
none (INPUT)
age
P0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
MinElute PCR-purification kit (QIAGEN) ChIP was performed using the iDeal ChIP-seq kit (Diagenode).

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
34430040
Reads aligned (%)
99.7
Duplicates removed (%)
12.4
Number of peaks
511 (qval < 1E-05)

mm9

Number of total reads
34430040
Reads aligned (%)
98.6
Duplicates removed (%)
13.0
Number of peaks
645 (qval < 1E-05)

Base call quality data from DBCLS SRA