SRX134775
GSM902930: KAP1 KO ChIPSeq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trim28

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
B cell enriched splenocytes from KAP1 KO mouse
cell type
B cell enriched splenocytes
strain
C57BL/6 / sv129sv
chip antibody
RBCC (Schultz et al. Genes Dev. 2001)
genotype/variation
KAP1 KO

Sequenced DNA Library

library_name
GSM902930: KAP1_KO_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
28095736
Reads aligned (%)
96.0
Duplicates removed (%)
56.7
Number of peaks
552 (qval < 1E-05)

mm9

Number of total reads
28095736
Reads aligned (%)
95.5
Duplicates removed (%)
56.7
Number of peaks
644 (qval < 1E-05)

Base call quality data from DBCLS SRA