Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Trim28

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
B cell enriched splenocytes
cell type
B cell enriched splenocytes
strain
C57BL/6 / sv129sv
chip antibody
RBCC (Schultz et al. Genes Dev. 2001)
genotype/variation
wildtype

Sequenced DNA Library

library_name
GSM902929: KAP1_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
48140104
Reads aligned (%)
88.1
Duplicates removed (%)
47.5
Number of peaks
805 (qval < 1E-05)

mm9

Number of total reads
48140104
Reads aligned (%)
87.6
Duplicates removed (%)
47.4
Number of peaks
947 (qval < 1E-05)

Base call quality data from DBCLS SRA