Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
AR

Cell type

Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
Mammary gland/breast metastatic carcinoma
cell line
MDA_MB_453
gender
female
chip antibody
AR (Santa Cruz Biotech, N-20, sc-816)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was carried out as described by Schmidt et al. Methods 48, 240-8 (2009) Tru-seq libraries were prepared and sequenced by Illumina sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
20367829
Reads aligned (%)
89.6
Duplicates removed (%)
4.1
Number of peaks
16899 (qval < 1E-05)

hg38

Number of total reads
20367829
Reads aligned (%)
91.3
Duplicates removed (%)
3.0
Number of peaks
16838 (qval < 1E-05)

Base call quality data from DBCLS SRA