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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: AR
wikigenes
PDBj
CellType: MDA-MB-453
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1339018
GSM1909089: MDA MB 453 ARChIPseq DHT2; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
AR
Cell type
Cell type Class
Breast
Cell type
MDA-MB-453
Primary Tissue
Breast
Site of Extraction
Effusion, Pericardial
Tissue Diagnosis
Carcinoma
Attributes by original data submitter
Sample
source_name
Mammary gland/breast metastatic carcinoma
cell line
MDA_MB_453
gender
female
chip antibody
AR (Santa Cruz Biotech, N-20, sc-816)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP-seq was carried out as described by Schmidt et al. Methods 48, 240-8 (2009) Tru-seq libraries were prepared and sequenced by Illumina sequencing.
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
20367829
Reads aligned (%)
94.1
Duplicates removed (%)
3.0
Number of peaks
16838 (qval < 1E-05)
hg19
Number of total reads
20367829
Reads aligned (%)
93.5
Duplicates removed (%)
4.1
Number of peaks
16899 (qval < 1E-05)
Base call quality data from
DBCLS SRA