Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

source_name
Resistant line
tissue
haematopoietic progenitors
condition
Resistant
strain
C57BL/6
chip antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
38987751
Reads aligned (%)
98.3
Duplicates removed (%)
5.9
Number of peaks
269 (qval < 1E-05)

mm9

Number of total reads
38987751
Reads aligned (%)
98.2
Duplicates removed (%)
6.0
Number of peaks
267 (qval < 1E-05)

Base call quality data from DBCLS SRA