Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Muscle
Cell type
C2C12
Primary Tissue
Skeletal Muscle
Tissue Diagnosis
NOS

Attributes by original data submitter

Sample

source_name
C2C12 myoblasts
cell line
C2C12
developmental stage
Myoblast (MB)
antibody
IgG (Santa Cruz)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatins from myoblasts and myotubes were isolated and sonicated to 100-300nt for immunoprecipitation with antibodies Purified RNA was fragmented and the cDNA was synthesized by reverse transcription. The resulting double-stranded DNA fragments were end-repaired and A-nucleotide overhangs were added. ChIP-seq libraries were constructed closely according to the standard illumina pair-end ChIP-seq procedure After the attachment of anchor sequences, fragments were PCR-amplified using Illumina primers.

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
38713272
Reads aligned (%)
89.3
Duplicates removed (%)
14.6
Number of peaks
301 (qval < 1E-05)

mm9

Number of total reads
38713272
Reads aligned (%)
89.2
Duplicates removed (%)
15.3
Number of peaks
308 (qval < 1E-05)

Base call quality data from DBCLS SRA