Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ets1

Cell type

Cell type Class
Blood
Cell type
P5424
NA
NA

Attributes by original data submitter

Sample

source_name
P5424 thymic cell line
treatment
WT
cells used
5.00E+07
antibody
Santa Cruz (sc-350x)
antibody quantity
10 µg
magnetic beads
Sheep anti-rabbit IgG dynabeads
bead volume
100µl
estimated fragment size
150bp
cell line
P5424

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Phenol-chroloform Library preparation was carried out as per manufacturer’s instructions (Illumina) using 10ng material. Samples were subsequently size-selected via gel migration and extraction,. Sequencing was carried out on an Illumina HiSeq 2000. The quality of libraries was checked with the Bioanalyser DNA High sensitivity and by Q-PCR.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
43059249
Reads aligned (%)
97.4
Duplicates removed (%)
28.9
Number of peaks
836 (qval < 1E-05)

mm9

Number of total reads
43059249
Reads aligned (%)
97.3
Duplicates removed (%)
29.3
Number of peaks
818 (qval < 1E-05)

Base call quality data from DBCLS SRA