Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
T-47D
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
T47D breast cancer cell line
cell line
T47D
cell type
ERalpha-positive breast cancer cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and ERα complexes were isolated with antibody. ChIP-seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
35147367
Reads aligned (%)
98.7
Duplicates removed (%)
13.3
Number of peaks
1031 (qval < 1E-05)

hg19

Number of total reads
35147367
Reads aligned (%)
97.8
Duplicates removed (%)
15.0
Number of peaks
1056 (qval < 1E-05)

Base call quality data from DBCLS SRA