Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
IgG CHIP-seq in LCL
cell line
LCL
cell type
EBV positive B-cell
chip antibody
IgG

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lu et al, 2010 Virology journal 7, 262 TruSeq ChIP Sample Prep kit ChIP-Seq protocol is as described previously (Lu et al, 2010 Virology journal 7, 262). Total RNA was isolated for RNA-Seq using Trizol reagent.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
26701870
Reads aligned (%)
93.9
Duplicates removed (%)
8.4
Number of peaks
562 (qval < 1E-05)

hg19

Number of total reads
26701870
Reads aligned (%)
92.9
Duplicates removed (%)
9.1
Number of peaks
936 (qval < 1E-05)

Base call quality data from DBCLS SRA