Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
RAJI
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
IgG CHIP-seq in Raji
cell line
Raji
cell type
EBV positive B-cell
chip antibody
IgG

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lu et al, 2010 Virology journal 7, 262 TruSeq ChIP Sample Prep kit ChIP-Seq protocol is as described previously (Lu et al, 2010 Virology journal 7, 262). Total RNA was isolated for RNA-Seq using Trizol reagent.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
11963119
Reads aligned (%)
83.9
Duplicates removed (%)
33.1
Number of peaks
300 (qval < 1E-05)

hg19

Number of total reads
11963119
Reads aligned (%)
82.9
Duplicates removed (%)
34.4
Number of peaks
607 (qval < 1E-05)

Base call quality data from DBCLS SRA