Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Arntl

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver
strain
C57BL/6
tissue
Liver
age
Adult (3-6months)
antibody
anti-BMAL1 (Abcam; #ab3350-200; lot 805009)
time
ZT8

Sequenced DNA Library

library_name
GSM904672: ChIP-Seq_Mouse_Liver_ZT8_BMAL1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
60952293
Reads aligned (%)
67.3
Duplicates removed (%)
17.6
Number of peaks
963 (qval < 1E-05)

mm9

Number of total reads
60952293
Reads aligned (%)
67.2
Duplicates removed (%)
17.6
Number of peaks
1091 (qval < 1E-05)

Base call quality data from DBCLS SRA