SRX131914
GSM902779: NCC TFAP2A; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TFAP2A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived neural crests
NA
NA

Attributes by original data submitter

Sample

source_name
NCC_TFAP2A
cell type
Neural crest cells (hNCC) derived from H9 ESC
chip antibody
TFAP2A (Santa Cruz, catalog#:sc-184, lot#:H0911)

Sequenced DNA Library

library_name
GSM902779: NCC_TFAP2A
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10965534
Reads aligned (%)
98.0
Duplicates removed (%)
3.8
Number of peaks
14255 (qval < 1E-05)

hg19

Number of total reads
10965534
Reads aligned (%)
97.4
Duplicates removed (%)
4.4
Number of peaks
14246 (qval < 1E-05)

Base call quality data from DBCLS SRA