SRX131372
GSM900167: MDAH087 IgG ChIP-Seq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
NOS2

Cell type

Cell type Class
Epidermis
Cell type
MDAH087
NA
NA

Attributes by original data submitter

Sample

source_name
MDAH087 fibroblast cell line
cell type
Fibroblast cells from Li Fraumeni patient
mutant p53
R248W
antibody
IgG (N-20; Santa Cruz; sc-651)

Sequenced DNA Library

library_name
GSM900167: MDAH087_IgG_ChIP-Seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34418717
Reads aligned (%)
70.6
Duplicates removed (%)
3.5
Number of peaks
1008 (qval < 1E-05)

hg19

Number of total reads
34418717
Reads aligned (%)
70.1
Duplicates removed (%)
4.5
Number of peaks
1236 (qval < 1E-05)

Base call quality data from DBCLS SRA