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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: Embryonic brains
ATCC
MeSH
RIKEN BRC
SRX130597
GSM898370: Input; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA
Attributes by original data submitter
Sample
source_name
neural stem cells
tissue source
cerebral cortex
age of source
e12.5
genotype
wild type
chip antibody
none
cell type
neural stem cells
treatment
TGFb
Sequenced DNA Library
library_name
GSM898370: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30816197
Reads aligned (%)
97.3
Duplicates removed (%)
11.9
Number of peaks
1198 (qval < 1E-05)
mm9
Number of total reads
30816197
Reads aligned (%)
97.2
Duplicates removed (%)
12.0
Number of peaks
1060 (qval < 1E-05)
Base call quality data from
DBCLS SRA