Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Embryo
Cell type
Embryonic brains
NA
NA

Attributes by original data submitter

Sample

source_name
neural stem cells
tissue source
cerebral cortex
age of source
e12.5
genotype
wild type
chip antibody
none
cell type
neural stem cells
treatment
TGFb

Sequenced DNA Library

library_name
GSM898370: Input
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
30816197
Reads aligned (%)
97.3
Duplicates removed (%)
11.9
Number of peaks
1198 (qval < 1E-05)

mm9

Number of total reads
30816197
Reads aligned (%)
97.2
Duplicates removed (%)
12.0
Number of peaks
1060 (qval < 1E-05)

Base call quality data from DBCLS SRA