SRX130498
GSM898227: Input HCT116-WT TNF-treatment rep2; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Digestive tract
Cell type
HCT 116
Primary Tissue
Colon
Tissue Diagnosis
Carcinoma

Attributes by original data submitter

Sample

source_name
human colorectal carcinoma cell line HCT116
celll line
HCT116
genotype/variation
Wild type
stimulation
TNF
chip antibody
none

Sequenced DNA Library

library_name
GSM898227: Input_HCT116-WT_TNF-treatment_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
24090472
Reads aligned (%)
77.6
Duplicates removed (%)
4.0
Number of peaks
906 (qval < 1E-05)

hg19

Number of total reads
24090472
Reads aligned (%)
76.7
Duplicates removed (%)
5.6
Number of peaks
1104 (qval < 1E-05)

Base call quality data from DBCLS SRA