Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
JMJD1C

Cell type

Cell type Class
Blood
Cell type
HL-60
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
HL60 cells
cell line
HL60
cell type
myeloblast
disease
acute myeloblastic leukemia
chip antibody
anti-JMJD1C serum

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from crosslinked and sonicated cells and JMJD1C-DNA or LYL1-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
36366808
Reads aligned (%)
65.8
Duplicates removed (%)
30.9
Number of peaks
42295 (qval < 1E-05)

hg38

Number of total reads
36366808
Reads aligned (%)
67.5
Duplicates removed (%)
29.7
Number of peaks
42391 (qval < 1E-05)

Base call quality data from DBCLS SRA