Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
H293T_TET2 kd_H3K4me3
cell line
H293T
genotype/variation
TET2 knockdown (RNAi TET2)
chip antibody
H3K4me3
chip antibody vendor
Abcam

Sequenced DNA Library

library_name
GSM897580: H293T_H3K4me3 RNAi TET2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
32691456
Reads aligned (%)
87.7
Duplicates removed (%)
64.1
Number of peaks
5545 (qval < 1E-05)

hg19

Number of total reads
32691456
Reads aligned (%)
87.1
Duplicates removed (%)
65.7
Number of peaks
5492 (qval < 1E-05)

Base call quality data from DBCLS SRA