Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mESCs cultured in SL
cell type
ESCs
passages
30-40
strain
C57BL/6
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated cells and protein-DNA complexes were isolated with antibody. Single read - Illumina

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
45578903
Reads aligned (%)
93.8
Duplicates removed (%)
23.3
Number of peaks
349 (qval < 1E-05)

mm9

Number of total reads
45578903
Reads aligned (%)
93.5
Duplicates removed (%)
23.2
Number of peaks
398 (qval < 1E-05)

Base call quality data from DBCLS SRA