SRX130109
GSM896743: MCF-7 input DNA; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF-7 cells
cell type
Immortalized breast cancer cells
passages
15-18
chip antibody
none

Sequenced DNA Library

library_name
GSM896743: MCF-7 input DNA
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
23855029
Reads aligned (%)
98.4
Duplicates removed (%)
4.3
Number of peaks
5176 (qval < 1E-05)

hg19

Number of total reads
23855029
Reads aligned (%)
97.5
Duplicates removed (%)
5.2
Number of peaks
5223 (qval < 1E-05)

Base call quality data from DBCLS SRA