Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SETDB1

Cell type

Cell type Class
Epidermis
Cell type
WM853
NA
NA

Attributes by original data submitter

Sample

source_name
Chromatin IP against SetDB1
cell type
Melanoma
chip antibody
SetDB1
antibody catalog number
Santa Cruz SC-66884
cell line
WM853.2

Sequenced DNA Library

library_name
GSM897123: ChIP-Seq for SetDB1 in WM853.2 melanoma cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg19

Number of total reads
11775000
Reads aligned (%)
36.1
Duplicates removed (%)
42.3
Number of peaks
570 (qval < 1E-05)

hg38

Number of total reads
11775000
Reads aligned (%)
37.0
Duplicates removed (%)
41.3
Number of peaks
526 (qval < 1E-05)

Base call quality data from DBCLS SRA