Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
SETDB1
Cell type Class
Epidermis
Cell type
WM853

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
Chromatin IP against SetDB1
cell type
Melanoma
chip antibody
SetDB1
antibody catalog number
Santa Cruz SC-66884
cell line
WM853.2

Metadata from Sequence Read Archive

Library Description


library_name
GSM897123: ChIP-Seq for SetDB1 in WM853.2 melanoma cells
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Platform Information


instrument_model
Illumina Genome Analyzer II

External Database Query

Logs in read processing pipeline


Number of total reads
11775000
Reads aligned (%)
62.5
Duplicates removed (%)
42.3
Number of peaks
568 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA