SRX130093
GSM897121: Seq for WM853.2 melanoma cells WCE; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Epidermis
Cell type
WM853
NA
NA

Attributes by original data submitter

Sample

source_name
WM853.2 WCE
cell type
Melanoma
chip antibody
None
antibody catalog number
None WCE
cell line
WM853.2

Sequenced DNA Library

library_name
GSM897121: Seq for WM853.2 melanoma cells WCE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
9957890
Reads aligned (%)
90.3
Duplicates removed (%)
13.0
Number of peaks
179 (qval < 1E-05)

hg19

Number of total reads
9957890
Reads aligned (%)
89.9
Duplicates removed (%)
13.5
Number of peaks
230 (qval < 1E-05)

Base call quality data from DBCLS SRA