SRX130092
GSM897120: 11182009 42YK9AAXX B4; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC1A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC BG03
NA
NA

Attributes by original data submitter

Sample

source_name
Smc1 ChipSeq in human ES cells
chip antibody
Smc1
antibody catalog number
Bethyl A300-055A
cell line
BGO3 (feeder free)
cell type
embryonic stem cells

Sequenced DNA Library

library_name
GSM897120: 11182009_42YK9AAXX_B4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
11343166
Reads aligned (%)
67.3
Duplicates removed (%)
2.2
Number of peaks
8289 (qval < 1E-05)

hg19

Number of total reads
11343166
Reads aligned (%)
66.9
Duplicates removed (%)
2.7
Number of peaks
8363 (qval < 1E-05)

Base call quality data from DBCLS SRA