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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SMC1A
wikigenes
PDBj
CellType: hESC BG03
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX130092
GSM897120: 11182009 42YK9AAXX B4; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SMC1A
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC BG03
NA
NA
Attributes by original data submitter
Sample
source_name
Smc1 ChipSeq in human ES cells
chip antibody
Smc1
antibody catalog number
Bethyl A300-055A
cell line
BGO3 (feeder free)
cell type
embryonic stem cells
Sequenced DNA Library
library_name
GSM897120: 11182009_42YK9AAXX_B4
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
11343166
Reads aligned (%)
65.1
Duplicates removed (%)
2.7
Number of peaks
8363 (qval < 1E-05)
hg38
Number of total reads
11343166
Reads aligned (%)
65.8
Duplicates removed (%)
2.2
Number of peaks
8289 (qval < 1E-05)
Base call quality data from
DBCLS SRA