SRX130091
GSM897119: 11132009 619PLAAXX B6; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMC3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC BG03
NA
NA

Attributes by original data submitter

Sample

source_name
Smc3 ChipSeq in human ES cells
chip antibody
Smc3
antibody catalog number
Abcam AB9263
cell line
BGO3 (feeder free)
cell type
embryonic stem cells

Sequenced DNA Library

library_name
GSM897119: 11132009_619PLAAXX_B6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
15791781
Reads aligned (%)
81.5
Duplicates removed (%)
1.6
Number of peaks
18641 (qval < 1E-05)

hg19

Number of total reads
15791781
Reads aligned (%)
81.0
Duplicates removed (%)
2.3
Number of peaks
18687 (qval < 1E-05)

Base call quality data from DBCLS SRA