SRX130089
GSM897117: 12042009 619VVAAXX B3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SMAD3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA

Attributes by original data submitter

Sample

source_name
2h, Smad3
chip antibody
Smad3
antibody catalog number
Abcam AB28379
cell line
BGO3 (feeder free)
cell type
embryonic stem cells

Sequenced DNA Library

library_name
GSM897117: 12042009_619VVAAXX_B3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
21361679
Reads aligned (%)
51.1
Duplicates removed (%)
11.6
Number of peaks
2758 (qval < 1E-05)

hg19

Number of total reads
21361679
Reads aligned (%)
50.6
Duplicates removed (%)
12.4
Number of peaks
2746 (qval < 1E-05)

Base call quality data from DBCLS SRA