SRX130061
GSM896986: Sox2 ChIP-Seq at 48hrs Post-Induction; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SOX2

Cell type

Cell type Class
Epidermis
Cell type
BJ
Primary Tissue
Skin
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
BJ_Sox2 ChIP-Seq_48hr_postinduction
cell line
BJ
cell type
foreskin fibroblast cell
genotype/variation
infected with lentiviruses encoding for dox-inducible Oct4, Sox2, Klf4, and c-Myc, along with lentiviruses expressing rtTA2M2
time point
48hrs post-induction with with 1µg/ml dox
chip antibody
Sox2
chip antibody vendor
R&D

Sequenced DNA Library

library_name
GSM896986: Sox2 ChIP-Seq at 48hrs Post-Induction
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
66665400
Reads aligned (%)
62.9
Duplicates removed (%)
3.3
Number of peaks
13418 (qval < 1E-05)

hg19

Number of total reads
66665400
Reads aligned (%)
62.5
Duplicates removed (%)
4.0
Number of peaks
13042 (qval < 1E-05)

Base call quality data from DBCLS SRA