Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Brd4

Cell type

Cell type Class
Blood
Cell type
Hematopoietic Stem Cells
MeSH Description
Progenitor cells from which all blood cells derived. They are found primarily in the bone marrow and also in small numbers in the peripheral blood.

Attributes by original data submitter

Sample

source_name
Resistant line
tissue
haematopoietic progenitors
condition
Resistant
strain
C57BL/6
chip antibody
BRD4

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysate were isolated from formaldehybe cross-linked cells and sonicated to release the chromatin, then immunoprecipitated with antibody ThruPLEXTM-FD Prep Kit protocol (Rubicon Genomics)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
21099312
Reads aligned (%)
96.5
Duplicates removed (%)
26.4
Number of peaks
1790 (qval < 1E-05)

mm9

Number of total reads
21099312
Reads aligned (%)
96.3
Duplicates removed (%)
26.5
Number of peaks
1808 (qval < 1E-05)

Base call quality data from DBCLS SRA