SRX1292229
GSM1895990: Deformed ChIP; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Embryo
Cell type
5-10h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
wild-type embryos
developmental stage
5 to 9.5 hours
genotype
wild type
strain
Oregon R

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
The ChIP protocol of Sandmann et al, Nature Protocols, 2006 was used to isolate gDNA fragments. Illumina standard library protocol.

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
47408050
Reads aligned (%)
58.9
Duplicates removed (%)
65.3
Number of peaks
4782 (qval < 1E-05)

dm3

Number of total reads
47408050
Reads aligned (%)
59.4
Duplicates removed (%)
60.5
Number of peaks
4460 (qval < 1E-05)

Base call quality data from DBCLS SRA