SRX129104
GSM894096: U87 WCE 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
Glioblastoma
chip antibody
None
cell type
U87

Sequenced DNA Library

library_name
GSM894096: U87_WCE_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39915674
Reads aligned (%)
94.8
Duplicates removed (%)
10.2
Number of peaks
787 (qval < 1E-05)

hg19

Number of total reads
39915674
Reads aligned (%)
93.9
Duplicates removed (%)
11.0
Number of peaks
866 (qval < 1E-05)

Base call quality data from DBCLS SRA