SRX129100
GSM894092: H2171 WCE CHROM; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
None
cell type
H2171

Sequenced DNA Library

library_name
GSM894092: H2171_WCE_CHROM
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35419871
Reads aligned (%)
94.5
Duplicates removed (%)
3.9
Number of peaks
2683 (qval < 1E-05)

hg19

Number of total reads
35419871
Reads aligned (%)
93.9
Duplicates removed (%)
4.7
Number of peaks
2141 (qval < 1E-05)

Base call quality data from DBCLS SRA