Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Neural
Cell type
U-87 MG
Primary Tissue
Brain
Tissue Diagnosis
Glioblastoma

Attributes by original data submitter

Sample

source_name
Glioblastoma
chip antibody
Med1/TRAP220
cell type
U87

Sequenced DNA Library

library_name
GSM894082: U87_MED1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
52598199
Reads aligned (%)
63.4
Duplicates removed (%)
18.0
Number of peaks
37154 (qval < 1E-05)

hg38

Number of total reads
52598199
Reads aligned (%)
64.6
Duplicates removed (%)
17.2
Number of peaks
36786 (qval < 1E-05)

Base call quality data from DBCLS SRA