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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: MED1
wikigenes
PDBj
CellType: NCI-H2171
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX129089
GSM894081: H2171 MED1 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
MED1
Cell type
Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell
Attributes by original data submitter
Sample
source_name
Small Cell Lung Carcinoma
chip antibody
Med1/TRAP220
cell type
H2171
Sequenced DNA Library
library_name
GSM894081: H2171_MED1_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
31905501
Reads aligned (%)
93.9
Duplicates removed (%)
11.7
Number of peaks
22451 (qval < 1E-05)
hg19
Number of total reads
31905501
Reads aligned (%)
93.1
Duplicates removed (%)
12.4
Number of peaks
22310 (qval < 1E-05)
Base call quality data from
DBCLS SRA