SRX129089
GSM894081: H2171 MED1 1; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
Med1/TRAP220
cell type
H2171

Sequenced DNA Library

library_name
GSM894081: H2171_MED1_1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
31905501
Reads aligned (%)
93.9
Duplicates removed (%)
11.7
Number of peaks
22451 (qval < 1E-05)

hg19

Number of total reads
31905501
Reads aligned (%)
93.1
Duplicates removed (%)
12.4
Number of peaks
22310 (qval < 1E-05)

Base call quality data from DBCLS SRA