SRX129081
GSM894073: H2171 H3K4ME3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Lung
Cell type
NCI-H2171
Primary Tissue
Lung
Site of Extraction
Effusion, Pleural
Tissue Diagnosis
Carcinoma Small Cell

Attributes by original data submitter

Sample

source_name
Small Cell Lung Carcinoma
chip antibody
H3K4me3
cell type
H2171

Sequenced DNA Library

library_name
GSM894073: H2171_H3K4ME3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
34878204
Reads aligned (%)
76.9
Duplicates removed (%)
19.0
Number of peaks
45340 (qval < 1E-05)

hg19

Number of total reads
34878204
Reads aligned (%)
76.7
Duplicates removed (%)
19.0
Number of peaks
45250 (qval < 1E-05)

Base call quality data from DBCLS SRA